RnoEX0037098 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10227379-10233835:-
Coord C1 exon
chr3:10233735-10233835
Coord A exon
chr3:10230835-10230976
Coord C2 exon
chr3:10227379-10227539
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCACCTTTTCCTTTACCAGGAA
3' ss Score
10.91
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGACGGGATTAGTCCAGAAAGAGCAGCACAGGTCATGGGCCCTCCAGATCGGTGTCAGCATGCAGCACGCATCATCAATGAGCTCATCCTCACGGCACAG
Seq A exon
GAAAGAGAGATCCTTGGAGGCCTCACGGGAACAAGAGGAAGAGGCCGAGGCCGTGGTGATTGGAGTGTGGGCACTCCTGGTGGCATCCAGGAAATTACATACACAGTGCCAGCTGATAAATGCGGCCTCGTGATAGGCAAAG
Seq C2 exon
GGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCACGTGGAGCTGCAGCGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATCGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139-'15-23,'15-19,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.410 C2=0.698
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTAGTCCAGAAAGAGCAGCA
R:
TCTATGAGATGCCTGGCCACC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]