DreEX6008859 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:868844-870784:+
Coord C1 exon
chr5:868844-868944
Coord A exon
chr5:869252-869393
Coord C2 exon
chr5:870624-870784
Length
142 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGTGTGTTTTGCAGGAG
3' ss Score
11.37
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATGATGGCATCAGTCCGGACCGGGTGGCTCAAGTCATGGGTCAGCCAGAGCGGTGTCAGCACGCGGTTCACCTCATCAATGAGCTGGTGCAGACGGCACAG
Seq A exon
GAGCGTGATGGTTTTGGGGGTCCGCTCGGGCCCCGGGGTCGTGGCAGGGGTCGTGGAGACTGGAACATCGGCACTCCTGGAGGCCTGCAGGAGGTCACCTACACAATACCGGCTGATAAATGCGGCCTGGTCATCGGAAAAG
Seq C2 exon
GTGGAGAGACCATAAAGAACATCAACCAGCAGTCCGGCGCTCATGTGGAGCTGCAGAGAAACCCTCCGCCCAACACCGACCCCAATGTGCGCATTTTCTCCATCCGCGGATCCCCTCAGCAGATGGAGATGGCCAGACAGCTGATTGACGACAAGATCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.604 C2=0.963
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGCATCAGTCCGGACC
R:
GTCAATCAGCTGTCTGGCCAT
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]