MmuEX0019735 @ mm10
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31605243-31611739:+
Coord C1 exon
chr2:31605243-31605343
Coord A exon
chr2:31608085-31608226
Coord C2 exon
chr2:31611579-31611739
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCACCTTTTTCCCTTACCAGGAA
3' ss Score
11.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGACGGGATTAGTCCAGAAAGAGCAGCGCAGGTCATGGGCCCTCCAGATCGGTGTCAGCATGCAGCTCGCATCATCAATGAGCTCATTCTCACGGCACAG
Seq A exon
GAAAGAGAGATCCTTGGTGGCCTCACAGTAACAAGAGGAAGAGGCCGAGGCCGTAGTGACTGGAGTGTGGGCACTCCTGGGGGCGTCCAGGAAATTACGTACACAGTGCCAGCTGATAAGTGCGGCCTTGTGATAGGCAAAG
Seq C2 exon
GGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.388 C2=0.779
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
ENSMUST00000113482fB10277
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCCAGAAAGAGCAGCGC
R:
CATCTATGAGATGCCTGGCCAC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types