BtaEX6046821 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017473 | LAMC3
Description
laminin, gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr11:101307223-101311185:+
Coord C1 exon
chr11:101307223-101307325
Coord A exon
chr11:101309464-101309663
Coord C2 exon
chr11:101311039-101311185
Length
200 bp
Sequences
Splice sites
3' ss Seq
AGCCTCGGCTGGGTTTACAGGAA
3' ss Score
4.58
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CTGCACCAGGAAGCCAGAGCCGCCCTGACCCGAGCTTCCTCATCTGTCCAGGCTGCCACGGTGACTGTCATGGGAGCCAGGACTCTGCTGGCTGACGTGGAAG
Seq A exon
GAATGAAGCCAAGGTTTCCTCGGCCCAAGGACCAGGCCGCGCTGAGGAGGAAGGCGGCTATCGTCCAGGACAGGATCCTTGCAGACTCGAGAAAGAAGACCAAGCAGGCAGAGAGGATGCTGGGAGATGCGGCTTCTGTCTCCTCCAGGGCCAAGAAGAAGGGCAGGGAAGCCGAGCTGCTGGCCCAGGACAGTGCCAAG
Seq C2 exon
CTCGCCAAGGCCTTGCTGAGGGCAGGGAAGCAGGAACACCGCCGGGCTAGCGGGCTCTCCAGCCAGACGAGGGCGACCCTCGGACTGGCCTCCCGGCAGCTGCTGGCCTCAGAAGCACACAGACAGGAGCTGGAGGCGGCTGAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017473-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.687 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCAGGAAGCCAGAG
R:
CCACTCAGCCGCCTCCAG
Band lengths:
250-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]