MmuEX0026092 @ mm10
Exon Skipping
Gene
ENSMUSG00000026840 | Lamc3
Description
laminin gamma 3 [Source:MGI Symbol;Acc:MGI:1344394]
Coordinates
chr2:31935729-31939657:+
Coord C1 exon
chr2:31935729-31935831
Coord A exon
chr2:31937890-31938089
Coord C2 exon
chr2:31939511-31939657
Length
200 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGGCCAATTTTGCAGGAA
3' ss Score
4.38
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CTACGCAATAAGACCACAGCTGCCTTCACACGGGCTTCCTCAGCTGTGCAAGCTGCCAAGGTGACCGTCATAGGAGCAGAGACCCTGCTAGCTGACCTAGAGG
Seq A exon
GAATGAAGCTGAGGTCTCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAAGAAAGCAGGCAGCATCAGGACCAGGCTCCTGGAGGACACAAAGAGGAAGACCAAGCAGGCAGAGAGGATGCTGGGAAATGCTGCCTCTCTCTCCTCCAGCACCAAGAAGAAAAGCAAAGAAGCAGAACTGATGTCTAAGGACAATGCCAAG
Seq C2 exon
CTCTCCAGAGCTTTGCTGAGGGAAGGCAAGCAGGGCTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCCACACTCCGTCGGGCCTCTCGCCTGCTGCTGACCTCAGAAGCACACAAGCAGGAGCTGGAGGAAGCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026840-'34-32,'34-31,35-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.907 C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAAGACCACAGCTGCCT
R:
GCTTCCTCCAGCTCCTGC
Band lengths:
239-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types