DreEX0042513 @ danRer10
Exon Skipping
Gene
ENSDARG00000093572 | lamc3
Description
laminin, gamma 3 [Source:ZFIN;Acc:ZDB-GENE-060531-121]
Coordinates
chr5:33935416-33940195:+
Coord C1 exon
chr5:33935416-33935518
Coord A exon
chr5:33937199-33937401
Coord C2 exon
chr5:33940052-33940195
Length
203 bp
Sequences
Splice sites
3' ss Seq
AATAATGTTCTCTGCTGTAGACA
3' ss Score
8.07
5' ss Seq
AAAGTAATA
5' ss Score
0.92
Exon sequences
Seq C1 exon
TTGACGGCTGCGGTGGAGGGATTGAAGGTGTCAGCCGTCTCCTCTGTGGTGACTGGGAAAGAGGTGGAGGCGGAGATTCTGTCTCTGCAAAAGAGTCTGCAAG
Seq A exon
ACATGGAGCAGGACTGGCCTCAACTGCCCACGCTCAGCAAAAGCTTTCTGAAGAGAGAGAAGATGCTGAACGAGAAGACACTGGTGGAGGTGAAAAAAAGAGTGAAGCAGACAGAGAAGATGATCAAGCCCTCAGTGGAGAATGCGACAGATGCAGACAGTACAGCTAAACAGGCCGAGGCGTCGGCAGACACGGTGGCTAAA
Seq C2 exon
GATGCCAAAGCCTCCTTCACGCAGGGGAAACGGATAAAACATGCATCTGGACAGTTGCGTTCAGCTCTAGACGTCACCCTGGAGCAGTTGTCTGAGCTGGAGAGCCAAACCGCACTGAAACAGGCAACATTGGAAGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093572-'24-24,'24-23,26-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.603 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACGGCTGCGGTGGAG
R:
CCTCTGCTTCCAATGTTGCCT
Band lengths:
245-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]