GgaEX0005141 @ galGal4
Exon Skipping
Gene
ENSGALG00000003852 | LAMC3
Description
laminin, gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr17:6076218-6076832:+
Coord C1 exon
chr17:6076218-6076320
Coord A exon
chr17:6076401-6076600
Coord C2 exon
chr17:6076686-6076832
Length
200 bp
Sequences
Splice sites
3' ss Seq
AAGGTTGGGTGTCCCCACAGGCA
3' ss Score
7.39
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTCCAGGACCGGGCTGGCTCTGCTCATGATCTATCCACCTCAGCAGTCTCGCAGGGGAAAGCAGTGCTCTCCGGTGCAGAGTCCCTCCTGGGCAGCTTGGAAG
Seq A exon
GCATGAGGAAGGTGTTGGGGCATCGGAAAGGTCGTGCTGCCCTGAGAAGGAGAATGGCACAAGTGCGGGACAGAGCAATGGTGGAGGCCCAGAAGAAGATTAAACAGGCAGAGAAAATGCTGGGAAACTCCTTGTCTGTCTCCAGTGCGGCCAGGAGGAAGGCAGGGGAGGCTGTGCATGTTGCTGGGGAGAGCAGTAAG
Seq C2 exon
AGGGCCCAGGCTGTACTGCAGGGCAGCAAGCAGGCTCGCAAGCACACCAGGACGCTCGCCACACGTGTCAGCGAGACCCAGCAGGAGCTGTACCGGCAGCAGCGCGTGGCTGAGGAGCTCAGGGGGAGCCTGGAGGAGGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003852_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.672 C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
PF102344=Cluap1=PU(26.6=62.7)
C2:
PF102344=Cluap1=FE(30.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCTCTGCTCATGATC
R:
CTGCTCTGCCTCCTCCAGG
Band lengths:
239-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]