RnoEX6016328 @ rn6
Exon Skipping
Gene
ENSRNOG00000059507 | Lamc3
Description
laminin subunit gamma 3 [Source:RGD Symbol;Acc:1309399]
Coordinates
chr3:9273298-9277676:-
Coord C1 exon
chr3:9277574-9277676
Coord A exon
chr3:9275538-9275737
Coord C2 exon
chr3:9273298-9273444
Length
200 bp
Sequences
Splice sites
3' ss Seq
AGCCTTGGCTGATTTTGCAGGAA
3' ss Score
5.84
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CTACGAAACAAGACCACAGCTGCCCTGACACAGGTTTCCTCAGCTGTCCAAGCTGCTAAGGTGACCGTCATAGGAGCGAAGACCCTGCTAGCTGACCTAGAGG
Seq A exon
GAATGAAGCTAAGGTTCCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAGGAAAGCAGGCAGCATCAGGACCAGGCTCTTGAAGGACACGAAGAGAAAGACCAAGCAGGCAGAGAGGATGCTGGGAAATGCTGCCTCGCTCTCCTCCAACTCCCAGAAGAGAAGCAAAGAAGCAGAACTGATGTCCAAGGAGAATGCCAAG
Seq C2 exon
CTTGCCAGAGCTTTCCTGAGGGAAGGGAAGCAGAACTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCCACACTCCGCCAGGCCTCTCGCCTGGTGCTGACCTCAGAAGCACGGAAACAGGAGCTGGAAGAAGCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059507-'26-28,'26-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.642 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000090137fB7760
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACAAGACCACAGCTGC
R:
CTTCCAGCTCCTGTTTCCGTG
Band lengths:
237-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]