GgaEX0005141 @ galGal3
Exon Skipping
Gene
ENSGALG00000003852 | LAMC3
Description
NA
Coordinates
chr17:6694094-6694799:+
Coord C1 exon
chr17:6694094-6694287
Coord A exon
chr17:6694368-6694567
Coord C2 exon
chr17:6694653-6694799
Length
200 bp
Sequences
Splice sites
3' ss Seq
AAGGTTGGGTGTCCCCACAGGCA
3' ss Score
7.39
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
CCTTCTCCTGCATCCCACCCAAGGCACAGGGCTGGTGCTCCAGCAGCTCTTTGCCCTCTCCCCAGCCTCACTCCTGCTCTCTCATCCCCAGCTCCAGGACCGGGCTGGCTCTGCTCATGATCTATCCACCTCAGCAGTCTCGCAGGGGAAATCAGTGCTCTCCGGTGCAGAGTCCCTCCTGGGCAGCTTGGAAG
Seq A exon
GCATGAGGAAGGTGTTGGGGCATCGGAAAGGTCGTACTGCCCTGAGAAGGAGAATGGCACAAGTGCGGGACAGAGCGATGGTGGAGGCCCAGAAGAAGATTAAACAGGCAGAGAAAATGCTGGGAAACTCCTTGTCTGTCTCCAGTGCGGCCAGGAGGAAGGCAGGGGAGGCTGTGCATGTTGCTGGGGAGAGCAGTAAG
Seq C2 exon
AGGGCCCAGGCTGTACTGCAGGGCAGCAAGCAGGCTCGCAAGCACACCAGGACGCTCGCCACACGTGTCAGCGAGACCCAGCAGGAGCTGTACCGGCAGCAGCGCGTGGCTGAGGAGCTCAGGGGGAGCCTGGAGGAGGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003852-'23-27,'23-26,24-27
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.136 A=0.634 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
PF102344=Cluap1=PU(33.3=51.2)
C2:
PF102344=Cluap1=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTCTTTGCCCTCTC
R:
CTGCTCTGCCTCCTCCAGG
Band lengths:
301-501
Functional annotations
There are 0 annotated functions for this event