BtaEX6046853 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101425354-101434500:+
Coord C1 exon
chr11:101425354-101425510
Coord A exon
chr11:101429824-101429976
Coord C2 exon
chr11:101434329-101434500
Length
153 bp
Sequences
Splice sites
3' ss Seq
CATGTTCTTCATCTCTTCAGATA
3' ss Score
10.22
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CAGTCGTCCTCTTCCAGCGGCAGCGTGTTTGGGTCTGGAAACGCTGGAAGAGGGGGAGGCTTCTTCAGCGGCCTCGGAGGAAAACCCAGCCAGGATGCAGCCAACAAAAACCCGTTCAGCTCGGCCAGCGGGGGCTTTGGGTCCACAGCTACCCCAA
Seq A exon
ATACCTCTAACCTGTTCGGAAACAGTGGAGCCAAGACATTTGGCGGATTTGCCAGCTCATCATTTGGAGACCAGAAGCCTGCTGGCACTTTCAGCTCTGGAGGAGGAAGCGTGGCCTCCCAAGGCTTTGGGTTTTCTACTCCAAATAAAACAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGCACTGCTGCCGCCAGCGCGGGAGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'39-40,'39-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=0.255 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGGGGAGGCTTCTTCA
R:
CTCTCCGAACACTTTGCCTCC
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]