GgaEX1040924 @ galGal4
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6122396-6126642:+
Coord C1 exon
chr17:6122396-6122552
Coord A exon
chr17:6124780-6124929
Coord C2 exon
chr17:6126471-6126642
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTAACCTTCATCTCCCCAGATT
3' ss Score
6.9
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CAGTCGTCATCTTCCACTGGAGGCCTCTTTGGATCTGGAAGTGGTGGGAGAGGTGGAGGCTTCTTCACTGGTTTGGGAGGAAAGCCAAGTCAGGATGCAGCCAATAAGAATCCTTTTGGTTCCTCCAGTGGAGGATTTGGATCGGCAGCTTCCCAGA
Seq A exon
ATTCTTCTAGCTTATTTGGGAACAGTGGAGCCAAGGCCTTTGGATTTGGCAACTCATCTTTTGGAGACCAGAAACCCACAGGCACTTTCAGCTCTGGTGGTGGCAGTGTGGCATCTCAAGGCTTTGGGTTCTCTAGTCCAACCAAAGCAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCCACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAACCTTTTCAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGCGAGGGTACAGCTGCAGCCAGCGCCGGAGGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.275 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000006070fB10118
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCACTGGAGGCCTCTTT
R:
TGAAAAGGTTGGGGCTGAACC
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]