MmuEX0032773 @ mm10
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32039323-32047574:+
Coord C1 exon
chr2:32039323-32039476
Coord A exon
chr2:32042417-32042569
Coord C2 exon
chr2:32047403-32047574
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCTTGTTCCCTTTAGATA
3' ss Score
11
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TCATCCACTTCCAGTGGTGGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCCTTCAGCTCAGCCGGTGGGGGCTTTGGATCTACAGCTGCCCCAA
Seq A exon
ATACCTCTAATCTGTTTGGAAACAGTGGAGCTAAGACATTTGGAGGGTTTGGCAGCTCATCCTTCGGGGAACAGAAGCCTGCCGGCACATTCAGCTCTGGCGGTGGGAGCGTAGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAACAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCTGCCAGCGCAGGCGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-'62-78,'62-71,67-78=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.457 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000065398fB13926
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGAGGGGGCGGTTTCTT
R:
CTCTCCGAACACTTTGCCTCC
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types