DreEX0052206 @ danRer10
Exon Skipping
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71179027-71182941:+
Coord C1 exon
chr5:71179027-71179182
Coord A exon
chr5:71179750-71179902
Coord C2 exon
chr5:71182770-71182941
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTGTGCGTGCTGCAGGTC
3' ss Score
8.12
5' ss Seq
CAGGTCACA
5' ss Score
2.22
Exon sequences
Seq C1 exon
CTTCAGGTGGTCTGTTCGGCTCAAATGCTGGAAACGCTTCATCAGGATCAGGGTTTTTCAGCGGTCTCGGAGGGAAACCCAGTGAAGACGCTGCTAACAAGAACCCGTTTGGAGCTCCAGCGGCCGCCGGAGGATTCGGGCAGCCCATAAACACAG
Seq A exon
GTCCGTCTAACCTGTTCGGCAGCACTGGAGCAAAGGGGTTCAGTTTCGGCAACAGTTCGTTCGGGGAGCAGAAGCCCAGCGGGTCCTTCAGCAGCGGAGGCGGATCTGTGGCCGCACAGGGCTTTGGTTCCTTCTCCACTCCCACTAAACCAG
Seq C2 exon
CTGGTTTTGGCACTGCTCCGGTGTTCGGCAGTCCTCCAACATTCGGTGGTTCTCCAGCGTTCGGTGGGACTCCAGCGTTCGGCTCGGCTCCGGCCTTCAGCAGCCCACAGAGCGGCTCCTCAGGGAAGGTGTTTGGGGAGGGAACCACAGCGTCCAACATGGGCGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.500 C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAGGGTTTTTCAGCGGT
R:
CAAACACCTTCCCTGAGGAGC
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]