GgaEX1040924 @ galGal3
Exon Skipping
Gene
ENSGALG00000003830 | NUP214
Description
NA
Coordinates
chr17:6743640-6747888:+
Coord C1 exon
chr17:6743640-6743796
Coord A exon
chr17:6746024-6746173
Coord C2 exon
chr17:6747717-6747888
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTAACCTTCATCTCCCCAGATT
3' ss Score
6.9
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CAGTCGTCATCTTCCACTGGAGGCCTCTTTGGATCTGGAAGTGGTGGGAGAGGTGGAGGCTTCTTCACTGGTTTGGGAGGAAAGCCAAGTCAGGATGCAGCCAATAAGAATCCTTTTGGTTCCTCCAGTGGAGGATTTGGATCGGCAGCTTCCCAGA
Seq A exon
ATTCTTCTAGCTTATTTGGGAACAGTGGAGCCAAGGCCTTTGGATTTGGCAACTCATCTTTTGGAGACCAGAAACCCACAGGCACTTTCAGCTCTGGTGGTGGCAGTGTGGCATCTCAAGGCTTTGGGTTCTCTAGTCCAACCAAAGCAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCCACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAACCTTTTCAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGCGAGGGTACAGCTGCAGCCAGCGCCGGAGGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-'55-63,'55-62,56-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.235 C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCACTGGAGGCCTCTTT
R:
TGAAAAGGTTGGGGCTGAACC
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]