RnoEX0061728 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11057650-11065648:+
Coord C1 exon
chr3:11057650-11057803
Coord A exon
chr3:11061338-11061487
Coord C2 exon
chr3:11065477-11065648
Length
150 bp
Sequences
Splice sites
3' ss Seq
CGCTGTTCTTGCCCCTTCAGATA
3' ss Score
11.05
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TCATCCACTTCCAGTGGCAGCGTGTTTGGGTCTGGAAATGCTACAAGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGGTCTACGCCTACACCCA
Seq A exon
ATACCTCTAACCTGTTCGGGAACAGCGGAGCTAAGACCTTCGGAGGGTTCGGCTCCTCCTTCGGGGAGCAGAAGCCTGCTGGCACATTCAGCTCTGGTGGTGGGAGCGTGGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAACAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCCGCCAGCGCAGGAGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-'34-43,'34-41,36-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.451 C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGAGGGGGCGGTTTCTT
R:
CTCTCCGAACACTTTGCCTCC
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]