BtaEX6046896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101629027-101630534:+
Coord C1 exon
chr11:101629027-101629223
Coord A exon
chr11:101629788-101629933
Coord C2 exon
chr11:101630393-101630534
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGAATCTTGGTTCAGACG
3' ss Score
4.68
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GTCCCCAGACGAGGCCTTGCCTGGAGGTCTTGGCTGCGGCAGTGGGAGCGGCCATTACACGCTGGAGCGGGCAGCCCATGCTGCCTCTGACGTCACCGAAGCCTCCTGTGAGAAGGTAGAGAAGGAGGCCAAGCTGGCCGCCCAGAGGTCAGGCGAGCAGGGAGAGACCATGAAACCATTTGACCTGAACTACGGAC
Seq A exon
ACGCCATCATTGAAAATTGCGGATCCAGCCCTGGGGAGGAGAGTGAGGTGGGCTCTCTGGTGGGCGAAGGCTTCATTGAGGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAGGAGAGGAGAAAGAAGGAGCAAGCCGTGCAG
Seq C2 exon
GTTCCTGTCAAAGGCCGAAGTCTCTCCTCTCGAATTCCTCCTCGGTTTGCAAAGAAGCAGAACAACCTGTGCCTGGAGCAGGGTGATGGGCCTGTGCCCGGCAGCAGCCTGGGCACCGAGATCTGGGAGAGCGGCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'24-34,'24-33,25-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.673 C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTGGAGGTCTTGGCT
R:
GGCACAGGTTGTTCTGCTTCT
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]