DreEX6014812 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71248921-71249965:-
Coord C1 exon
chr5:71249787-71249965
Coord A exon
chr5:71249563-71249678
Coord C2 exon
chr5:71248921-71249062
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTGTTTCTCCACAGTTG
3' ss Score
11.35
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
ATCTCCAGAAGAGTCTGTCAGCGGTCTGAGCTCTGCGTCGGTGTACGGTGTGGAGCAGAACGAAGACCGCAGCACGCCTGAGCCCACAGGGAAGATCATAGAGAAAGAGTTGAAGCCCAGAAACATGAAGGCGGACATGACTGAACCGCTGTCCCAGTACGACCTCAACACTTACTCGA
Seq A exon
TTGAGAGTGACTCTGGAGCGTCGGTTCCCAGTCCAGAGGTTTTCCAGGATTCTCTGTCTAAAAAGCAGCGCCGTCCGCAGGAGGACGAGCGCAGGAGGAAGGAGCAGGGCCCTCCG
Seq C2 exon
AGTTCAGTAAAGAGCAGAACAATTGCTTCAAAGATGCCTCCGCGGTTTGCCAAGAAGCAGGGCAGCATGTCCATGGAGCAGCCGGAGGAGACGCTCACCGCAAACAACCTGGGAACTGAGATCTGGGAGACCAACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACGGTGTGGAGCAGAAC
R:
TCAGTTCCCAGGTTGTTTGCG
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]