HsaEX0007663 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131477744-131479393:+
Coord C1 exon
chr9:131477744-131477949
Coord A exon
chr9:131478474-131478619
Coord C2 exon
chr9:131479252-131479393
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTCGTGAAATCTTGGTTCAGGTG
3' ss Score
5.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAA
Seq A exon
GTGCCATCATTGAAAATTGCGGGTCCAGCCCCGGGGAGGAGAGTGAGGTGGGTTCTATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAAGAGAGAAGAAAGAAGGAGCAGGCCGTGCAG
Seq C2 exon
GTGCCTGTCAAAGGTCGAGGCCTTTCCTCCCGTATTCCTCCTCGATTTGCAAAAAAGCAGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAGCAGCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.617 C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCGAAGCCTCCAGTAA
R:
TGCTGCTCTCCCAGATCTCAG
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development