GgaEX1046431 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6203151-6205019:+
Coord C1 exon
chr17:6203151-6203350
Coord A exon
chr17:6204262-6204407
Coord C2 exon
chr17:6204878-6205019
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCATATGCACTTTGTTTAGGTA
3' ss Score
7.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTCCAGAAGAAGGAGGGGGCCTTGGCAACACCAGTGGTGGGAGCAGCCACTCCATTTACAGCCTGGATAGGGCCTCTCTTGCGAACTCAGAGAGTGCTGAAGGGCCGGGTAAAAAGTCAGAGAAGGAGCCAAAGTCTGCTGTGCAGAGAGCAAGCGAAAAGGGAGAGACATTATCACAGTTTGAACTGAATTATGGAA
Seq A exon
GTACCATCATTGATAATCGGGTGTCAAGCACAGCAGAAGAGAATGAAGTGGGATCTATGGCGGGTGAAGGCTTCATTGAAGTTCTTACCAAAAAACAGCGTCGTTTGCTGGAAGAGGAGAGAAGGAAGAAGGAGCAGGCTGCTCAG
Seq C2 exon
GCACCAGCTAAGGCCCGTGTTCTTCAATCTCGCATTCCTCCTCGATTTGCTAAGAAGCAGAACAGCTTGTGCTTGGAGCAAAGTGATGTAACTGTGTCTGGAAACAGCCTGGGCACAGAAATCTGGGAGAGCAACAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.776 C2=0.771
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGGCCTCTCTTGCGAACT
R:
GATTTCTGTGCCCAGGCTGTT
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]