HsaEX0007663 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134353131-134354780:+
Coord C1 exon
chr9:134353131-134353336
Coord A exon
chr9:134353861-134354006
Coord C2 exon
chr9:134354639-134354780
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTCGTGAAATCTTGGTTCAGGTG
3' ss Score
5.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAA
Seq A exon
GTGCCATCATTGAAAATTGCGGGTCCAGCCCCGGGGAGGAGAGTGAGGTGGGTTCTATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAAGAGAGAAGAAAGAAGGAGCAGGCCGTGCAG
Seq C2 exon
GTGCCTGTCAAAGGTCGAGGCCTTTCCTCCCGTATTCCTCCTCGATTTGCAAAAAAGCAGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAGCAGCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'26-30,'26-29,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=0.602 C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCGAAGCCTCCAGTAA
R:
TGCTGCTCTCCCAGATCTCAG
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)