MmuEX6100491 @ mm10
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32216046-32217335:+
Coord C1 exon
chr2:32216046-32216233
Coord A exon
chr2:32216612-32216757
Coord C2 exon
chr2:32217197-32217335
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGGCCTTTGGTTCAGATG
3' ss Score
6.89
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCTCCAGATGAGGCCTTGCCTGGAGGCCTTGGCAGCCATTCACCCTATGCCTTGGAGAGAACCACTCACGCCAGCTCTGACGGTCCTGAAACCCCCAGTAAGAAATCAGAGAGAGAGGTTTCTTTGCCTACCCAGAGGGCTAGTGAGCAGGAAGAGGCCCGGAAGCAGTTTGACCTGGGCTATGGAA
Seq A exon
ATGCTCTCATTGACAACTGCGCCTCCAGCCCTGGGGAAGAGAATGAAGCAAGCTCTGTGGTGGGTGAAGGCTTCATTGAAGTCCTGACCAAGAAGCAGCGTCGCCTGCTGGAGGAGGAGAGAAGAAAAAAAGAACAGGCTGCTCAG
Seq C2 exon
GTGCCTGTCAAAGGTCGGGGCCTTTCATCCCGGATTCCTCCTCGGTTTGCTAAAAAGCAGAACGGCCTGTGTCTGGAGCAAGATGTGACTGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAACAGCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'73-44,'73-42,77-44=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.766 C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGACGGTCCTGAAAC
R:
TTCTCCCAGATCTCAGTGCCC
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types