BtaEX6047005 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102994278-102999964:-
Coord C1 exon
chr11:102999777-102999964
Coord A exon
chr11:102995530-102995633
Coord C2 exon
chr11:102994278-102994430
Length
104 bp
Sequences
Splice sites
3' ss Seq
CAGTCCTTTTCTTTCTTTAGACC
3' ss Score
8.07
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
CAGGCTGGTAGTGGCATCAATGAAGAACCTTCAAAGTCTTTAATGCACGTCCTGAACCAGCAGAGCACATTCGTGTCAGATAATGGCCCAGCAAGCCAATATTGGGGAGCTCCTCTCCATGCTGGACTCCCCTCTGCTGAGTGTGCGTGATGATGTAACAACTGTCTTTAAAGAGAATCTCAATTCTG
Seq A exon
ACCGTGGTCCTATGCTTGTGAACACCCTGGTGGATTATTATCTGGAAACCAACTCTCAGCCTGTATTGCACATCCTGACTACCTTGCAAGAGCCCCATGATAAG
Seq C2 exon
CACCTCTTGGACAAAATGAATGAATACGTGGGCAAGGCCGCCTCTCGGTTATCCGCCCTCTTGCTACTGGGCCACGTCGTGAGGCTGCAGCCGTCATGGAAGCATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTCTACTAAAATGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.029
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PU(26.2=94.4)
A:
PF043887=Hamartin=FE(26.2=100)
C2:
PF043887=Hamartin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCACGTCCTGAACCAGC
R:
GCTTATGCTTCCATGACGGCT
Band lengths:
257-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]