RnoEX6016174 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7237192-7239890:+
Coord C1 exon
chr3:7237192-7237421
Coord A exon
chr3:7238977-7239080
Coord C2 exon
chr3:7239738-7239890
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGATTGCTCTTTTTGTTTAGAAC
3' ss Score
7.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTAACAGTCATTTGTCACACTGTTCATATTTCCCTTTTGCAGTCTGGTAGTGGCCCTAATGAAGAGCTGTGGAAGCCTTTAGCACATGTCCTGGAGCCCACACAGCATAATTGAGTGAGAGAATGGCCCAGCTAGCCAACATTGGGGAGCTACTCTCCATGCTGGACTCTTCCACACTGGGTGTGCGTGATGACGTGACAACCATCTTCAAGGAGTCCCTCAATTCTG
Seq A exon
AACGTGGGCCTATGCTTGTAAACACGTTGGTGGATTATTACCTGGAAACCAATTCTCAGCCGGTCTTGCACATCCTGACCACCCTGCAAGAGCCACATGATAAG
Seq C2 exon
CACCTCTTGGACAAAATGAATGAGTATGTAGGCAAAGCTGCCACCCGCTTATCCATCCTCTCGCTGCTGGGGCATGTTGTGAGGCTGCAGCCATCTTGGAAGCATAAGCTCTCTCAAGCACCTCTTCTGCCTTCTTTACTGAAATGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PU(4.7=94.4)
A:
PF043887=Hamartin=FE(4.7=100)
C2:
PF043887=Hamartin=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTAATGAAGAGCTGTGG
R:
GCAGCGAGAGGATGGATAAGC
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]