DreEX6083925 @ danRer10
Exon Skipping
Gene
ENSDARG00000057918 | tsc1b
Description
tuberous sclerosis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3404]
Coordinates
chr21:17270341-17275789:+
Coord C1 exon
chr21:17270341-17270564
Coord A exon
chr21:17273297-17273400
Coord C2 exon
chr21:17275637-17275789
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTGTATTTTGCAGATC
3' ss Score
10.88
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
TGGTGCCTGGGGACTGTTTCGACGGGAGGCCCAGGGACCCCTCCAGGCTGGACAGGACACGGGACGCTGTGAGCGTGACGTCTGAGAGACTGTTTAAGAGACCCTCCACACCGTCATGTCCAGGGAACAGCTGAACGTGGGGGATCTTCTTCCCCTGTTGGAGACCTCTGACCTCCGCCAGCTGAACGAGATCAAGGGCCTTATTAATGAACACCTCAACACAG
Seq A exon
ATCGAGGGTCCGTGCTGCTGAATGGTTTGGTGGATTATTTCCTGGAGACCAACTCTGCCCAGACAGTGCACATCCTGTCTTCAGTGAGGGAGCCACATGATAAG
Seq C2 exon
CACCTTTTTGATAAAATGAATGAATGCATGGCTAAAGCCCCCTGTCGCCTGCCCACCCTCACTCTCCTGGGGCATGTTGTCCGTAAGCAGCCATCTTGGATCCACAAGATCGCGCACTATCCGCTGCTGCTATCTCTCCTCAAATGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057918-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PU(4.5=91.9)
A:
PF043887=Hamartin=FE(4.5=100)
C2:
PF043887=Hamartin=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAGACCCTCCACACCGTC
R:
GGATAGTGCGCGATCTTGTGG
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]