GgaEX1060750 @ galGal4
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6739753-6741651:-
Coord C1 exon
chr17:6741497-6741651
Coord A exon
chr17:6740555-6740658
Coord C2 exon
chr17:6739753-6739905
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGTCTTATTAAGACC
3' ss Score
7.3
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGGAACTTCCTGAAATTCTAACCTCCACATTCATGTTAGTACATGCATCATGGCACAGCAGGGGAATGTTGGTGAGCTCCTCTCAATGCTGGATTCTCCAATTCTGGGTGTCCTGGAAGACATAACAGCTGCATTCAAAGATAATCTCATTTGTG
Seq A exon
ACCGTGGACCTATGCTTGTGAACAGCCTGGTAGACTATTACTTGGAAACCAATTCTCAGCAGGCACTGCATATACTGTCCACGTTGCAGGAGCCTCATGACAAG
Seq C2 exon
CACCTTCTGGACAAAATTAATGAATATATGGGCAAAGCTGCTACTCGTTTACCCACTCTCTCGCTGCTGGGACATGTGATAAGGCGACAACCATCGTGGAAACATAAGCTTTCTCAAGCACCTCTCCTACTTTCATTACTTAAATGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PU(13.8=94.4)
A:
PF043887=Hamartin=FE(13.8=100)
C2:
PF043887=Hamartin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTGAAATTCTAACCTCCACA
R:
CCACGATGGTTGTCGCCTTAT
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]