BtaEX6047009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102984097-102990494:-
Coord C1 exon
chr11:102990340-102990494
Coord A exon
chr11:102989888-102989961
Coord C2 exon
chr11:102984097-102984272
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTCAACCCAACTCTTTTAGCCA
3' ss Score
3.94
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCCATGTGACAGAAGTCTATCTCGTCCACCTCCACGCCAGCGTCTACGCTCTCTTCCATCGCCTGTATGGGATGTACCCTTGCAACTTTGTCTCCTTTCTGCGTTCTCACTACAGTATGAAGGAAAACCTGGAGACTTTTGAAGAAGTGGTCAAG
Seq A exon
CCAATGATGGAGCATGTGCGAATTCACCCGGAATTAGTGACTGGATCCAAGGACCATGAACTGGACCCTCGAAG
Seq C2 exon
GTGGAAGAGATTAGAAACACATGATGTTGTCATAGAATGTGCCAAAATCTCTCTGGACCCTACAGAGGCCTCATATGAAGATGGCTATTCTGTGTCTCACCAAATCTCAGCCCGTTTTCCTCACCGTTCAGCCGATGTCTCCGCCAGCTCTTACGTTGACACACAGAATAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'10-14,'10-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.200
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(7.1=100)
A:
PF043887=Hamartin=FE(3.4=100)
C2:
PF043887=Hamartin=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCGCCTGTATGGGATGT
R:
TATGAGGCCTCTGTAGGGTCC
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]