GgaEX6015287 @ galGal3
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
NA
Coordinates
chr17:7387853-7390033:-
Coord C1 exon
chr17:7389879-7390033
Coord A exon
chr17:7389482-7389555
Coord C2 exon
chr17:7387853-7388031
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTTGCTCATTCAGCCA
3' ss Score
8.29
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTCACGTGGCAGAGATTTACCTTGTCCATCTTCATGCCAGTGTTTATGCTCTCTTTCATCGGCTTTATGGAATGTATCCTTGCAATTTTGTCTCCTTTCTGCGTTCTCACTACAGTATGAAGGAAAACTTGGAGACCTTTGAAGAGGTAGTCAAG
Seq A exon
CCAATGATGGAACATGTGCGAATTCATCCAGAATTAGTGACTGGATCTAAGGACCATGAACTGGACCCACGAAG
Seq C2 exon
GTGGAAAAGACTAGAAACTCATGATGTTGTGATAGAATGTGCCAAAATCTCCCTGGACCCTGCAGAAGCCTCATATGAAGATGGCTATTACTCTGCGTCTCGGAAATCCTGTACAAACTTAAAACATCATCAAACTGACCCCAGTGCCAGCCATTACATTGACACACAGAGCAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'4-9,'4-6,5-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.227 C2=0.328
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(11.1=100)
A:
PF043887=Hamartin=FE(5.2=100),PF109733=DUF2799=PU(1.7=4.0)
C2:
PF043887=Hamartin=FE(13.1=100),PF109733=DUF2799=PD(96.6=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTTTCTGCGTTCTCAC
R:
CAGGATTTCCGAGACGCAGAG
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]