RnoEX0094260 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7242124-7250010:+
Coord C1 exon
chr3:7242124-7242278
Coord A exon
chr3:7242633-7242706
Coord C2 exon
chr3:7249835-7250010
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCAACCCGAACTCTTCTAGCCA
3' ss Score
2.63
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCCATGTGACAGAAGTCTACCTGGTCCACCTCCATGCCAGTGTTTATGCCCTCTTCCATCGCCTTTATGGAATGTACCCTTGTAACTTCGTCTCCTTCCTGCGCTCTCACTACAGCATGAAGGAAAACGTGGAGACTTTTGAAGAAGTGGTCAAG
Seq A exon
CCAATGATGGAGCATGTGCGAATTCACCCGGAATTAGTGACTGGATCCAAGGACCATGAACTGGACCCTCGAAG
Seq C2 exon
GTGGAAGACATTAGAAACTCATGATGTTGTAATAGAGTGTGCCAAAATCTCTCTGGACCCTACCGAAGCCTCATATGAAGATGGCGATGCTGTGTCTCACCAGCTCTCTGCCTGCTTCCCTCACCGTTCAGCTGATGTCACCACCAGCTCTTACGTGGACACACAGAATAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.217
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(7.1=100)
A:
PF043887=Hamartin=FE(3.3=100)
C2:
PF043887=Hamartin=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCTCTTCCATCGCCTT
R:
GCTTCGGTAGGGTCCAGAGAG
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]