BtaEX6047013 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102977291-102979679:-
Coord C1 exon
chr11:102979121-102979679
Coord A exon
chr11:102978030-102978073
Coord C2 exon
chr11:102977291-102977457
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCGACAACTTTCTTCCTAGGTT
3' ss Score
6.79
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
CGAGGAGGCTTCGACTCACCCTTCTACCGGGACAGTCTGCCGGGCTGCCCGCGGAAGACCCTCTCAGCTTCCTCCAGCACTCAGGGCACCAGCGCGAACCCTGAGCCTTTAAACTCCTCCCTGGACAAGTCGGGGCCTGACACACCAAAGCAAGCCTTCACGCCCATAGACCTGCCCTGCGGAGGCACCGGGGAGAGCCCTGCCGGGAACAGGGAGCGCCAGGCCTCTCTGGAGGCCAGCATCCTCACCCCCAGCCCCTGTAAAATTCCACCTCAGAGGGGAGTGGGGTTTGGCAGTGGGCAGCCTCCCCCATACGATCATCTTTTTGAGGTGGCATTGCCAAAGACTGCCCATCATTTTGTCAGCAAGAAGACGGAGGAACTGCTCAAGAAGGCAAAGGGAAGTGCAGAGGAGGACTTCACGCCCTCCGCCTCCCCTATGGAAGTGCTGGACAGGCTGATACAGCAGGGAGCGGACGTGCACAGCAAGGAGCTCAACAG
Seq A exon
GTTGTCTTTACCCAGCAAGTCTGTCGACTGGACCCACTTCGGAG
Seq C2 exon
GCTCTCCTCCCTCAGATGAGATCTGCACCCTCCGTAACCAGTTGCTTTTACTGCACAACCAGTTACTCTACGAGCGTTTCAAGCGGCAGCAGCACGCGCTGCGCAACAGGCGGCTCCTGCGCAAGGTGATCCGGGCCTCGGCTCTGGAGGAGCACAACGCCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'22-26,'22-25,23-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.312 C2=0.036
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(26.0=100)
A:
PF043887=Hamartin=FE(2.1=100)
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAAAGGGAAGTGCAGAG
R:
CGGAGGGTGCAGATCTCATCT
Band lengths:
144-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]