GgaEX1060753 @ galGal4
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6729651-6731219:-
Coord C1 exon
chr17:6730649-6731219
Coord A exon
chr17:6729934-6729977
Coord C2 exon
chr17:6729651-6729817
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGCTGCATTTCATTTTTCAGATT
3' ss Score
10.43
5' ss Seq
GAGGTGACG
5' ss Score
5.93
Exon sequences
Seq C1 exon
TCTCCATTTTATCACACAAATGAAAATCTGTCAGGTTCTCAGAAGAAGACCCAGTCAGTAGTCTCTAGTGTGCAGGGACACAGTCTGACCTCTGAGCCTTTAACGTCTTCTCTGGACAAGCCTGGGCCTGAGAGTGCACTGGAGACACCCAAACAAACATTTACTCCCATAGACAAGCCCTGCGGAGGCTCTGGTGAAAGCCCTGCTGGTAACAGGGAAGGAACCTCTGGGGAGACAAGTATTCTCACTCCCAGCCCTTGCAAAGCATCAGCACAAGGAAGAGCAGTGTTTGGGAGTGGGCAGCCTCCCCTGTATGAGCACCTTTTTGAGGTTGCGCTACCAAAGACTGCCTACCTCTTTGTTGGCAAGAAGACTGAGGAGCTGCTAAAGAAAGCCAAGGGAACCCAGGATAAAGACTGCATGTCCTCTACTTCTCCTGTGGAAGTACTGGACAGACTGATACAGCAAGGGGCAGATGCACACACTAAGGAACTGAACAA
Seq A exon
ATTGTCTCTGCCAAGCAAATCTGCTGACTGGACTCACTTTGGAG
Seq C2 exon
GTTCTCCCCCTTCAGATGAGATTCACACCCTGCGTAACCAATTGCTGTTGCTGCACAACCAGTTGCTGTATGAACGCTTCAAAAGACAGCAGCATGCCCTTCGGAACCGGCGGCTCTTGCGGAAAGTGATTAAAGCCACAGCACTGGAGGAACATAATGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'17-26,'17-25,19-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.562 C2=0.161
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(26.3=100)
A:
PF043887=Hamartin=FE(2.1=100)
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGATGCACACACTAAGG
R:
AAGGGCATGCTGCTGTCTTTT
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]