RnoEX0094256 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7254973-7257893:+
Coord C1 exon
chr3:7254973-7255531
Coord A exon
chr3:7256970-7257013
Coord C2 exon
chr3:7257727-7257893
Length
44 bp
Sequences
Splice sites
3' ss Seq
CCTGTGAAATCTTTTCCTAGGTT
3' ss Score
8.38
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CGAGGGGGCTTTGACTCTCCCTTCTACCGAGACAGTCTCTCTGGTTCTCAGCGGAAGACTCACTCAGCAGCCTCTGGGACTCAGGGCTTCAGCGTGAACCCTGAGCCTTTGCACTCCTCCCTGGACAAACATGGGCCTGACACACCAAAGCAAGCCTTTACTCCCATAGACCCACCCTCTGGCAGTGCTGATGCCAGTCCCGCTGGGGACAGGGATCGCCAGACTTCTCTGGAGACCAGTATCCTCACTCCCAGCCCTTGCAAAATTCCACCTCAGAGGGGAGTGAGCTTTGGAAGTGGGCAGCTTCCCCCATATGATCATCTCTTTGAGGTGGCCTTGCCAAAGACTGCCTGTCACTTTGTCAGCAAAAAGACTGAAGAGCTGTTGAAGAAAGCGAAAGGAAACCCTGAGGAAGACTGTGTGCCCTCTACCTCCCCAATGGAAGTACTGGACAGACTGCTAGAGCAGGGAGCAGGGGCACACAGCAAGGAACTGAGCAG
Seq A exon
GTTGTCCTTGCCCAGCAAGTCTGTTGACTGGACCCACTTTGGAG
Seq C2 exon
GCTCTCCCCCCTCAGATGAGATCCGGACCCTCCGAGACCAGTTGCTCTTACTGCACAATCAGCTGCTGTACGAACGCTTTAAGCGGCAGCAGCATGCACTGAGGAACAGAAGGCTGCTGCGCAAGGTGATCCGAGCTGCGGCCCTGGAGGAGCACAACGCAGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-'21-24,'21-23,22-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.375 C2=0.071
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(25.9=100)
A:
PF043887=Hamartin=FE(2.1=100)
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGCAAGGAACTGAGCA
R:
CAGCAGCCTTCTGTTCCTCAG
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]