BtaEX6047027 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021373 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:HGNC:4668]
Coordinates
chr11:103086582-103092272:+
Coord C1 exon
chr11:103086582-103086801
Coord A exon
chr11:103087982-103088180
Coord C2 exon
chr11:103092077-103092272
Length
199 bp
Sequences
Splice sites
3' ss Seq
TGTCCACCTCTCTCCCCCAGGGA
3' ss Score
11.69
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATCTACGCAGATGCCACCAAGAGGCTGGAGCTTTACTTCCGGCCCAAGGACCCCTACTGCCACCCCGTGTGTGCCAACCGCTTCAGTACCAACAGCTTGCTGCTCCGGATCAAGCGGAAGACCAGGCGACAGAGTGGGGTGCTGGGGCCTGAGGCTCGCCCCCAGGTCACGTACGACATAGAGAGCCTTGGAGTCATCTCCACCGTCTTCAAATTTCAAG
Seq A exon
GGATGTCTGACTTCCAGTACCTGGCGGTGCACACAGAGGCGGACGGCAGGCAGGTGTCCATGTACGACAAGGTGCTCATGCTCAAGCCCCAGAAGGAGAGCTTCTTCCACCAGGACCTGCCGCTCTACATCCCCCCACCCATCTTCTCCAGGCTGGACACGCCGGTGGACTACTACTACCGCCCAGAGACACAGCACCG
Seq C2 exon
GGAAGGCTACAACAATCCTGCCCTCTCGGGCGAGAACCTGATCGGCCTGAGCAGGGCCCGGCGCCCCCACAACGCCATCTTTGTCAACTTTGAGGGAGATGAGGTGCCTGAGCGGCCGATGGAGGCCGCGGTCCAAACGTGGAAGAAGGTCTGCACCAACCCCGTGGACCACAAAGTGGAGGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021373-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.030 C2=0.061
Domain overlap (PFAM):
C1:
PF097344=Tau95=FE(24.3=100)
A:
PF097344=Tau95=FE(22.0=100)
C2:
PF097344=Tau95=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGCAGATGCCACCAAGAG
R:
GAGGGCAGGATTGTTGTAGCC
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]