MmuEX0022151 @ mm9
Exon Skipping
Gene
ENSMUSG00000026816 | Gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:MGI Symbol;Acc:MGI:1917489]
Coordinates
chr2:28428897-28435257:-
Coord C1 exon
chr2:28435038-28435257
Coord A exon
chr2:28433396-28433594
Coord C2 exon
chr2:28428897-28429092
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCTTGTCTTTCCAGGAA
3' ss Score
12.95
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
ATCTACACTGACCCTACCAAGAGGCTCGAACTCTACTTCCGGCCCAAGGACCCATACTGCCACCCTGTGTGTGCTAACCGTTTCAGTACCAGCAGCCTGCTGCTCCGGATCCGGAAAAGAACAAGGCGTCGGAGAGGTGTCCTGGGAGACGAGGCCCACCCCCAGGTCACGTTCAACTTGGAGATCATTGGCATCATCTCCACAATTTACAAATTCCAGG
Seq A exon
GAATGTCTGACTTCCAGTACTTGGCAGTGCACACAGAAGCTGGTGGCAAGCATGTTTCCATGTATGACAGAGTGCTCATGCGCAAGCCTGAGAAGGAGGAGTTCTTCCATCAGGAGCTACCACTCTACATCCCCCCACCCATCTTCTCCAGGCTGGACACCCCTGTGGACTATTTCTATCGCCCTGAGACACAGCACCG
Seq C2 exon
AGAAGGCTATCATAATCCCACCATCTCAGGGGAGAACCTGATTGGACTGAGTAGAGCCCGGCGCCCCCACAACGCCATCTTTGTCAACTTTGAGGACACTGAGGTTCCTGAACAGCCTTTGGAGGCTGCAGTCCAGACATGGAAGAAGGCCTGCACCAATCCCATAGATCAGAAGGTGGAAGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026816-'6-10,'6-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.030 C2=0.076
Domain overlap (PFAM):
C1:
PF097344=Tau95=FE(24.3=100)
A:
PF097344=Tau95=FE(22.0=100)
C2:
PF097344=Tau95=FE(21.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACCCTACCAAGAGGCTC
R:
CTCCCCTGAGATGGTGGGATT
Band lengths:
248-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: