HsaEX0029016 @ hg19
Exon Skipping
Gene
ENSG00000148308 | GTF3C5
Description
general transcription factor IIIC, polypeptide 5, 63kDa [Source:HGNC Symbol;Acc:4668]
Coordinates
chr9:135906391-135926365:+
Coord C1 exon
chr9:135906391-135906551
Coord A exon
chr9:135919115-135919313
Coord C2 exon
chr9:135926170-135926365
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGCCCACCTCTCTTTCTAGGGA
3' ss Score
10.9
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCACAGGGATGGCGGCGGAGGCGGCCGATTTGGGGCTGGGGGCCGCCGTCCCCGTGGAGCTGAGGCGGGAGCGACGCATGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTGGCTAAGATGCTGCCGACTCTGGGCGGCGAGGAAGGCGTCTCCCGG
Seq A exon
GGATGTCTGACTTCCAGTACTTGGCTGTGCATACGGAAGCAGGCGGCAAGCATACGTCAATGTATGACAAGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCCGCTCTACATCCCCCCACCCATCTTCTCCCGGCTGGACGCCCCGGTGGACTACTTCTACCGACCAGAGACCCAGCACCG
Seq C2 exon
GGAAGGCTACAACAATCCCCCCATCTCAGGTGAGAATCTGATTGGCCTGAGCAGAGCCCGGCGCCCCCACAATGCCATCTTTGTCAACTTTGAGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGCACTAACCCCGTGGACCGGAAGGTGGAGGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148308_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.082
Domain overlap (PFAM):
C1:
PF097344=Tau95=PU(13.5=54.9)
A:
PF097344=Tau95=PU(33.0=98.5)
C2:
PF097344=Tau95=FE(18.4=100),PF097344=Tau95=PU(3.8=2.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGATGTGGCTAAGATGCT
R:
CTCAGCTCCTCCTCCACCTTC
Band lengths:
247-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)