RnoEX0040560 @ rn6
Exon Skipping
Gene
ENSRNOG00000010981 | Gtf3c5
Description
general transcription factor IIIC subunit 5 [Source:RGD Symbol;Acc:1305173]
Coordinates
chr3:7152643-7161354:-
Coord C1 exon
chr3:7161135-7161354
Coord A exon
chr3:7158263-7158461
Coord C2 exon
chr3:7152643-7152838
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTCTGTCTTTCCAGGAA
3' ss Score
12.89
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
ATCTACACTGACCCCACCAAGAGGCTGGAGCTCTACTTCCGGCCCAAGGACCCATACTGCCATCCAGTGTGTGCTAACCGCTTCAGTACCAGTAGCCTGCTGCTCCGAGTCCGGAAAAGAACAAGGCGTCGCAGAGGTGTCCCGGGAGACGAGGCCCACCCCCACGTCACGTTCGATCTGGAAATCCTTGGCACCATCTCCACAATTTACAAATTCCAGG
Seq A exon
GAATGTCTGACTTCCAGTACTTGGCAGTGCACACAGAGACTGACGGCACGCACGTGTCCATGTACGACAGAGTGCTCATGCGCAAGCCTGAGAAGGAGGAGTTCTTCCATCAGGAGCTGCCACTCTACATCCCCCCGCCCATCTTCTCCAGGCTGGACACCCCCGTGGACTATTTCTATCGCCCTGAGACACAGCACCG
Seq C2 exon
AGAAGGCTATCACAATCCCTCCATCTCAGGAGAGAACCTGATTGGACTGAGTAGAGCCCGGCGCCCTCACAATGCCATCTTTGTCAACTTTGAGGACACTGAAGTCCCTGAACAGCCGTTGGAGGCTGCAGTGCAGACGTGGAAGAAAGCCTGCACCAACCCCATCGATCAGAAGGTGGAGGAGGAGCTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010981-'6-2,'6-1,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.090 C2=0.076
Domain overlap (PFAM):
C1:
PF097344=Tau95=FE(24.3=100)
A:
PF097344=Tau95=FE(22.0=100)
C2:
PF097344=Tau95=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAACAAGGCGTCGCAGA
R:
GCTTTCTTCCACGTCTGCACT
Band lengths:
256-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]