DreEX6083359 @ danRer10
Exon Skipping
Gene
ENSDARG00000067979 | gtf3c5
Description
general transcription factor IIIC, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-060810-66]
Coordinates
chr21:11277107-11280961:+
Coord C1 exon
chr21:11277107-11277305
Coord A exon
chr21:11280442-11280640
Coord C2 exon
chr21:11280763-11280961
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATTTCTCACTTTAGGAA
3' ss Score
11.29
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ACATATGCAGACTCTACAAAAAGAATTGAGCTCCGCTTTCGGCCGGGGGATCCGTTCTGTCATCCTGCTTATGGAAATCGCTACTCCTCCACCAACCTGCTGCTCAGAGTTCGCCGCAGGACACGCAAAGGGAACAATGCAGAGACCCAAATCAGCATGGAGATAGTGGGACTTATAGGAACCACCTATAAGTTTCAAG
Seq A exon
GAATGGCTGACTTTCAGTATCTGGCATCTCACAACAACCCAGAAGGCAACCAGGTCTCCCTGTACGACAAGATCATTTTGCGCAAACCAGAGAAAAAGGAATTCTACGACAACCCTGTGCCTCTTTTCATTCCTCCCCCTATTTTCTCTCGTCTGGACATGCCTGTGGATTACTTCTATCGGCCTGATGTAATGCACAA
Seq C2 exon
CAAGGACACTGCATTTCAATCCGCTCTCATGAAAGATCATATTATCGCCCCAAATCGGGCTCGCCGGCCAAACAATGCCATTTTTGTCAACTTTGATGACAAGACCATACCATCAGAACCTCTGGAGGCTGCAGTGACCACCTGGAGGAAGCTCTGTGTTCATCCTAACGATTTAAAGGCAGAGAAGAAAATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067979-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF097344=Tau95=FE(22.4=100)
A:
PF097344=Tau95=FE(22.4=100)
C2:
PF097344=Tau95=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACGCAAAGGGAACAA
R:
AACACAGAGCTTCCTCCAGGT
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]