GgaEX1027806 @ galGal4
Exon Skipping
Gene
ENSGALG00000003441 | GTF3C5
Description
general transcription factor 3C polypeptide 5 [Source:RefSeq peptide;Acc:NP_001025855]
Coordinates
chr17:6780857-6782597:+
Coord C1 exon
chr17:6780857-6781061
Coord A exon
chr17:6781234-6781432
Coord C2 exon
chr17:6782405-6782597
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTTGTTTCCCATAGGAA
3' ss Score
11.71
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ATCTACGCGGACCCCGGCAAAAGGTTGGAGCTGTATTTCCGCCCCAAGGACCCCTACTGCCATCCCGTGTGTGCCAACCGCTTCCCCGCCTCCGCCATGCTGCTCAGGGTGAAGAGGAGGAGCAGGAGGAAGCGGCTGGGAGAGCAGGACGTCCAGTTTGAAATGGAAATTATGGGGATCGTCACGACGGTTTACAAATTTCAGG
Seq A exon
GAATGTCGGATTTCCAGTACCTAGCGATGCATTCTGGTCCCGATGGCAAACAAACCTCCATGTATGACAAAGTCCTCATGCTCAAGCCAGAGAAGGAGGAATTTTTCAATAGGGAATTACCTCTGTACATCCCTCCACCAATTTTCTCACGTCTGGACACTCCTGTTGACTATTACTATCGGCCAGATGTCCAACACCG
Seq C2 exon
GGAGGGCTACAACAATCCCCAGGTGTCTGCTGAGAACCTCATTGGCCTCAGCAGGGCCCGGCGCCCCAACAATGCCATCTTTGTGAACTTTGATGATGAAGTGCCAACCAAACCCCTGGATGCTGCTGCACAGGCCTGGAAGAAAGTGTGCACCAATCCTGTGGATAGGAAGGTGGAGGAAGAGCTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003441-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.060 C2=0.015
Domain overlap (PFAM):
C1:
PF097344=Tau95=FE(25.5=100)
A:
PF097344=Tau95=FE(24.7=100)
C2:
PF097344=Tau95=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAAAGGTTGGAGCTGTA
R:
GCTGAGGCCAATGAGGTTCTC
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]