BtaEX6047103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103468520-103475328:-
Coord C1 exon
chr11:103475066-103475328
Coord A exon
chr11:103474157-103474318
Coord C2 exon
chr11:103468520-103468600
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCTTCTGCCCACAGAGC
3' ss Score
11.08
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGACATCCCCGAGGACCTCAGGGACCCCTTCTACATCGACCAGTACGAGCAGGAGCACATCAAGCCTCCGGTCATCAAGCTCCTGCTGTCCAGCGAGCTGTACTGCCGCGTGTGCAGCCTCATCCTCAAAGGGGACCAGGTGGCCTCCCTGCAGGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAAAGGGATTTACGTGATGGAGAGCGACGACACCCCTGTGACGGAGCCCGACCTCAGCCACGCGCCCATCAAGATG
Seq A exon
AGCGCCCACATGGCGATGGTGGACGCCCTCATGATGGCCTACACCGTGGAGATGATCAGCATCGAGAAGGTGGTGGCCAGCGTCAAGCGCTTCTCCACCTTCAGCGCCTCCAAAGAGCTCCCATATGACCTTGAGGATGCCATGGTCTTCTGGGTCAACAAG
Seq C2 exon
GTAAATCTTAAAATGCGAGAGATAACAGAGAAAGAAGTTAAGTTAAAACAGCAGTTATTGGAAAGCCCAGCTCATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008-'11-4,'11-1,12-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(6.2=16.7)
C2:
PF0030726=CH=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCAGCGAGCTGTACTG
R:
TTGATGAGCTGGGCTTTCCAA
Band lengths:
255-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]