RnoEX6015932 @ rn6
Exon Skipping
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3403016-3414759:-
Coord C1 exon
chr3:3414497-3414759
Coord A exon
chr3:3413579-3413740
Coord C2 exon
chr3:3403016-3403096
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTCTCTGTTCCCAGAGT
3' ss Score
9.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACAACATCCCTGAGGATCTCCGAGACCCGTTTTACATCGACCAGTATGAGCAGGAGCACATTAAGCCACCTGTTATTAAGCTGCTCCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTCATCTTGAAAGGGGACCAGGCAGCTACCTTGCAAGGACATCAGTCTGTCATCCAGGCCCTGTCCCGGAAGGGCATCTATGTGATGGAGAGTGATGATACCCCTGTGACAGATGCTGATCTCAGCCAGGCACCTATTAAGATG
Seq A exon
AGTGGCCACATGGCGATGGTGGATGCCCTGATGATGGCCTATACTGTGGAGATGATCAGCATTGAGAAGGTGGTGGCCAGTGTCAAGCGTTTTTCTACGTTCAGCGCCTCAAAAGAACTTCCTTATGACCTTGAGGATGCCATGGTGTTCTGGATCAATAAG
Seq C2 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCTGCTCCTGTCCAGTGA
R:
GACTTTCCAGTGGCTGCTGTT
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]