DreEX6014314 @ danRer10
Exon Skipping
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64959478-64969154:-
Coord C1 exon
chr5:64968892-64969154
Coord A exon
chr5:64959867-64960028
Coord C2 exon
chr5:64959478-64959558
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCTTCCGTTTTGTGGCACAGAGT
3' ss Score
6.58
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATCACATCCCAGAGGACCTGCGGGACCCTTTCTACAGAGACCAGTATGAGCAGGAGCACATTAAGCCTCCAGTGATCCGGTTACTGCTGTCCTGTGAGCTGTACTGTCGCGTATGTGCCCTCATTCTCAAAGGAGACCAGGTGGCCTCTCTGCAGTCCCACCAGTCCGTCATCCAGGCCCTGTCTCGCAAAGGCATCTATGTCATGGAGGATGATGACACGCCGGTGACAGACTCCGATCTAACCTGTCAGCCAATCAAAATG
Seq A exon
AGTTCCCACATCCCCATGATTGATGCTTTGATGATGGCCTACACCGTGGAGATGATCAGCATTGAGAAGGTCGTGTCCTGCGTGAAGCGTTTCTCCACATTCAGTGCCTCCAAGGAGCTTCCCTTTGACCTCGAGGATGCAATGATCTTCTGGATCAACAAG
Seq C2 exon
GTGAACTTGAAAATGAGGGAGATCACAGAGAAAGAGCACAAATCAAAACAGCATCTGCTGGAATCTCCAAGTCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(5.7=16.7)
C2:
PF0030726=CH=FE(16.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGCCTCCAGTGATCCGGT
R:
GTGCTCTTTCTCTGTGATCTCCC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]