GgaEX1012719 @ galGal3
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8887237-8888161:+
Coord C1 exon
chr17:8887237-8887499
Coord A exon
chr17:8887689-8887850
Coord C2 exon
chr17:8888081-8888161
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCATTGTGTTCTTCTTTTAGAGT
3' ss Score
10.82
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATAACGTCCCGGAGGAGCTGAAGGACCCGTTCTACATAGACCAGTATGAGCAGGAGCACATCAAGCCTCCCGTCATCAAGCTGCTGCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTGATCCTCAAGGGCGACCAGGTGGCAGCGCTGCAGGGCCACCAGTCGGTGATCCAGGCACTGTCTCGAAAGGGGATTTACGTCATGGAGAGCGATGACACACCTGTGTCTGAATCTGATCTGGGCTGCGCACCAATCAAAATG
Seq A exon
AGTTCTCATATGGCAATGATTGATGCCCTTATGATGGCCTACACTGTAGAAATGATCAGCATTGAAAAGGTGGTCGCTAGTGTCAAGCGTTTCTCTACATTCAGTGCCTCAAAAGAACTGCCCTATGATCTGGAGGATGCAATGGTTTTCTGGATTAACAAG
Seq C2 exon
GTGAACCTTAAAATGAGAGAGATAACAGAGAAAGAGATTAAATTAAAACAGCAATTAATGGAAAGTCCAGGACATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(6.2=16.7)
C2:
PF0030726=CH=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCAGTGAGCTGTACTGC
R:
CTTCTGATGTCCTGGACTTTCC
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]