BtaEX6047123 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103758466-103759368:-
Coord C1 exon
chr11:103759320-103759368
Coord A exon
chr11:103758691-103758796
Coord C2 exon
chr11:103758466-103758556
Length
106 bp
Sequences
Splice sites
3' ss Seq
GACGGGGGTCCTCCCCACAGGGC
3' ss Score
9.92
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TATTTTAAAGCGTTTACAAAGGACTTCACAACTGGAGAAAACTTTAAAG
Seq A exon
GGCCCGACCGAGAACTGCAGACAGTGAGGCGGACCATGATCAACTTCCTGCAGAACCACACAGACGGCAATCGGCCCCCCGCCTGCCCGTCCTTGGACCCCATCAG
Seq C2 exon
GCCCAGTGACGTCCTTTCACTCATCGACAAGCGAGGTGACCGGTACGTGGCTGTGCTGTTGGAAGATGACAGCTCCTACGTCGGACGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'6-6,'6-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.194 C2=0.065
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.4=100)
A:
PF0008515=Thioredoxin=PD(10.8=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAAGCGTTTACAAAGGACTTCA
R:
CTCGCGTCCGACGTAGGAG
Band lengths:
138-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]