MmuEX6099672 @ mm10
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26224841-26226286:-
Coord C1 exon
chr2:26226238-26226286
Coord A exon
chr2:26225149-26225254
Coord C2 exon
chr2:26224841-26224931
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCCAGGTTTTCTTGTGTAGGAC
3' ss Score
7.42
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACGGGAGAAAATTTTAAAG
Seq A exon
GACCTGACAGGGAGCTGCGGACAGTCAGGCAGACAATGATCGACTTCCTGCAGAACCATACTGAGGGCACCTGGCCTCCTGCATGCCCACCCCTGGACCCTATTCA
Seq C2 exon
GTCCAGTGACATCCTTTCCTTCATGGATAGCCACAGTGGCCAATACCATGCTATTGTGTTTGAAAGCAATGGTTCTTATGTTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.5=100)
A:
PF0008515=Thioredoxin=PD(10.9=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTTACAAAGGAGTTTACAACGG
R:
CTCGTCCAACATAAGAACCATTGC
Band lengths:
130-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types