DreEX6014203 @ danRer10
Exon Skipping
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63610239-63613345:+
Coord C1 exon
chr5:63610239-63610287
Coord A exon
chr5:63610408-63610513
Coord C2 exon
chr5:63613255-63613345
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCATTTTGTGTACTGATAGGAG
3' ss Score
5.85
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
TATTTTAAGGCACATGACACCACAAATGACTTTGGAAAGACATATCAAG
Seq A exon
GAGCTGACAGAGAGCTTCAGACAGTCAGGCAGTTGATGGTGAACTTCATCCAGAACCACACTAGACAAGACTGGCCTGTGGGCTGCCCTCCGCTTCACCCTGCCAG
Seq C2 exon
GTCTGAGGACGTCCTGTCCTTAATGGGGAAGAAAACGGAGCATTACACTGCAGTTATAGTTGAGGACGGAAACTCCTACATAGGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.2=100)
A:
PF0008515=Thioredoxin=PD(12.4=38.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTAAGGCACATGACACCACA
R:
TCTCTCCCTATGTAGGAGTTTCCG
Band lengths:
138-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]