HsaEX6063978 @ hg19
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139110876-139116755:-
Coord C1 exon
chr9:139116707-139116755
Coord A exon
chr9:139115853-139115958
Coord C2 exon
chr9:139110876-139111010
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTGTGCTTCCGGCAGGAC
3' ss Score
8.09
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
Seq A exon
GACCTGACCGAGAGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGCCTGCCCGCGCCTAGACCCCATTCA
Seq C2 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-'2-7,'2-4,4-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.301 C2=0.131
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.4=100)
A:
PF0008515=Thioredoxin=PD(10.8=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTTACAAAGGAGTTTACAAC
R:
TTGTCAAATTCTCTCCAAACCACG
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)