GgaEX6015465 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8715088-8716416:+
Coord C1 exon
chr17:8715088-8715136
Coord A exon
chr17:8716030-8716135
Coord C2 exon
chr17:8716326-8716416
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTACCTTGGACTCAGCAGGAG
3' ss Score
2.17
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
Seq A exon
GAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
Seq C2 exon
GTCCAGTGATGTTACTTCTCTCTTTGACGAGAAAGCCCCTCATTATACTGCCATTGTGGTTGAAAGTAATAACTCCTACATTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.3=100)
A:
PF0008515=Thioredoxin=PD(12.5=38.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAAGCGTTTACAAAGCAGT
R:
CTCTCGTCCAATGTAGGAGTTAT
Band lengths:
139-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]