RnoEX0071962 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3677661-3679096:-
Coord C1 exon
chr3:3679048-3679096
Coord A exon
chr3:3677930-3678035
Coord C2 exon
chr3:3677661-3677751
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCCAGGCTTTCTTGTGTAGGAC
3' ss Score
6.97
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TATTTTAGAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
Seq A exon
GACCTGACAGGGAGCTACGGACGGTCAGGCAGACAATGATCGACTTCCTGCAGAACCACACTGAGGGCTCCCGGCCTCCTGCATGCCCACCCCTGGATCCTATTCA
Seq C2 exon
GTCCAGTGACATCCTTTCCTTCATGGACAGCCACAGTGGCCAGTACCATGCTGTTGTATTTGAAAGCAACGGTTCTTATGTTGGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(14.5=100)
A:
PF0008515=Thioredoxin=PD(10.9=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTACAAAGGAGTTTACAACTGG
R:
TCTCGTCCAACATAAGAACCGT
Band lengths:
130-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]