BtaEX6047128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103749209-103753701:-
Coord C1 exon
chr11:103753579-103753701
Coord A exon
chr11:103752516-103752666
Coord C2 exon
chr11:103749209-103749397
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCACACCCCTCTCTGCCCAGATT
3' ss Score
6.96
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTTCCCCGGACGACCGCCAGTCAGGAAGCTGCTGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCACTGGACAGGATCCCCTACGATGCCGTGCTTGACCTGGTCAACAACAAGATGCGG
Seq A exon
ATTTCTGGGATATTTCTCACTAATCACATAAAGTGGGTTGGATGTCAAGGAAGCCGACCGGAGCTGAGGGGCTACTCGTGTTCTCTCTGGAAACTGTTCCACACTCTGACTGTTGGAGCCGGGACCCACCCAAAGGCCCTGGATGGCACAG
Seq C2 exon
GTCTCGAGGACGACCCGCAGGCTGTGCTGCAGACCATCAGGAGGTATGTCCACGTCTTCTTCGGGTGTAAGGAATGCGGCGAGCATTTTGAGGAAATGGCTAAAGAATCAATAGATTCCGTGAAAACCCCGGACCAAGCGATTCTCTGGCTTTGGAAGAAGCATAACCTGGTCAACAGCCGCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGAAGCTGCTGGAGAT
R:
AAGCCAGAGAATCGCTTGGTC
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]