MmuEX6099677 @ mm10
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26213981-26218731:-
Coord C1 exon
chr2:26218609-26218731
Coord A exon
chr2:26217633-26217783
Coord C2 exon
chr2:26213981-26214169
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGGATGTTTTCTTCTCAGATT
3' ss Score
8.87
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGTTCCCTGGCCGGCCTGCAGTCAAGAAGCTGTTGGAGACACTGCAGGAGTGGTTGGCCAACCTCCCCCTGGACAAGATTCCATATAATGCCATCCTAGACCTAGTCAACAACAAAATGCAG
Seq A exon
ATTTCTGGAATCTTTCTTACCAGCCACGTAAAGTGGGTGGGATGTCAAGGAAGTCGATTGGAGTTGAGGGGCTACCCATGCTCCCTCTGGAAACTGTTTCACACTTTGACGGTTCAGGCCTCCACCCATCCAGAAGCGCTGGCTGGCACAG
Seq C2 exon
GCTTTGAAGGCCACCCCCAGGCTGTGTTGCAGGCCATCAGGAGATACATTCGCACATTCTTTGGGTGCAAAGAATGTGGTGAACATTTTGAGGAAATGGCTAAGGAGTCCATGGATTCTGTGAAAACTCCAGACCAAGCTGTTCTCTGGCTTTGGAGAAAGCACAACATGGTAAACAGCCGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTTGGAGACACTGCAG
R:
GCCAGAGAACAGCTTGGTCTG
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types