RnoEX0071960 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3667577-3672422:-
Coord C1 exon
chr3:3672300-3672422
Coord A exon
chr3:3671425-3671575
Coord C2 exon
chr3:3667577-3667765
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGGATGTTTTCCCCTCAGATT
3' ss Score
9.92
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTGTTCCCTGGCCGGCCACCAGTCAAGAAGCTGTTGGAGACCCTGCATGAGTGGCTGGCCAACCTCCCCCTGGACAAGATTCCATACAATGCCATCCTAGACCTAGTCAACAACAAAATGCAG
Seq A exon
ATTTCTGGACTCTTTCTTACCAGCCACATAACGTGGGTAGGATGTCAAGGAAGCCGATTGGAGTTGAGGGGCTACCCGTGCTCCCTCTGGAAACTGTTCCACACTTTGACGGTTCAGGCCTCCACCCATCCAGAAGCGCTGGTTGGCACAG
Seq C2 exon
GCTTTGAAGGTGACCCCCAGGCTGTGCTGCAGACCATGAGGAGATACATTCGCACATTCTTTGGGTGCAAAGAATGTGGTGAACATTTTGAGGAAATGGCTAAGGAGTCCATGGACTCCGTGAAAACTGCAGACCAAGCTGTTCTCTGGCTTTGGAGGAAGCACAACATGGTGAACAGCCGCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'12-12,'12-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
PF047778=Evr1_Alr=PU(23.3=47.1)
C2:
PF047778=Evr1_Alr=FE(61.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGACCCTGCATGAGTG
R:
CCTCCAAAGCCAGAGAACAGC
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]